API docs#

`gufe.components`	The building blocks for defining systems
`gufe.mapping`	Defining the relationship between different components
`gufe.protocols`	Defining processes for performing estimates of free energy differences
`gufe.settings`	General models for defining the parameters that protocols use
`gufe.storage`	How to store objects across simulation campaigns
`gufe.transformations`	A chemical system and protocol combined form a Transformation
`gufe.visualization`	Tools for visualizing various Gufe objects
`gufe.chemicalsystem`
`gufe.custom_codecs`
`gufe.custom_json`
`gufe.custom_typing`
`gufe.ligandnetwork`
`gufe.molhashing`
`gufe.network`
`gufe.tokenization`	The machinery for tokenizing gufe objects live in this module.
`gufe.utils`